2D QTL plotly — qtl2dplotly • gap

2D QTL plotly

Usage

qtl2dplotly(
  d,
  chrlen = gap::hg19,
  qtl.id = "SNPid:",
  qtl.prefix = "QTL:",
  qtl.gene = "Gene:",
  target.type = "Protein",
  TSS = FALSE,
  xlab = "QTL position",
  ylab = "Gene position",
  ...
)

Arguments

d: Data in qtl2dplot() format.
chrlen: Lengths of chromosomes for specific build: hg18, hg19, hg38.
qtl.id: QTL id.
qtl.prefix: QTL prefix.
qtl.gene: QTL gene.
target.type: Type of target, e.g., protein.
TSS: to use TSS when TRUE.
xlab: X-axis title.
ylab: Y-axis title.
...: Additional arguments, e.g., target, log10p, to qtl2dplot.

Value

A plotly figure.

Examples

if (FALSE) { # \dontrun{
INF <- Sys.getenv("INF")
d <- read.csv(file.path(INF,"work","INF1.merge.cis.vs.trans"),as.is=TRUE)
r <- qtl2dplotly(d)
htmlwidgets::saveWidget(r,file=file.path(INF,"INF1.qtl2dplotly.html"))
r
} # }