Skip to contents

Changelog

Source: NEWS.md

xpose 0.4.23

CRAN release: 2026-03-02

  • Updated tests for vpc 1.2.4

xpose 0.4.22

CRAN release: 2025-11-24

xpose 0.4.21

CRAN release: 2025-10-06

  • Compatibility fix for testthat > v3.2.3

xpose 0.4.20

CRAN release: 2025-09-02

  • Compatibility fix for ggplot2 v4.0.0

xpose 0.4.19

CRAN release: 2025-01-07

xpose 0.4.18

CRAN release: 2024-02-01

  • Compatibility fix for roxygen2 7.3.1
  • Fix bug when reading a control stream and using $PROB instead of $PROBLEM (@AndreasCalvagone, #222)
  • Introduced check_ext argument in xpose_data(), read_nm_model(), to bypass the strict NONMEM model format check if needed.
  • xpose now recognizes PATAB, COTAB, CATAB table names as patab, cotab, and catab types respectively (@certara-mtomashevskiy, #221)
  • Small documentation fixes and improvements

xpose 0.4.17

CRAN release: 2023-06-29

xpose 0.4.16

CRAN release: 2023-04-18

  • Updated tests for ggplot2 3.4.2

xpose 0.4.15

CRAN release: 2023-02-25

  • Updated minimal requirements for readr (>= 2.1.0) (@sebastianueckert, #208)
  • Updated minimal requirements for R (>= 3.5.0) because serialized objects in serialize/load version 3 cannot be read in older versions of R
  • Don’t summarize RANMETHOD as an estimation method (@vrognas, #213)
  • Fix bug when a given estimation method is used several time in a single $PROBLEM. Sequential $ESTIMATION are now each attributed different subprob visible to the user using list_files(xpdb) (@vrognas, #213)
  • Compatibility fix with ggplot2 3.4.0, all layers but geom_point and geom_text should now use linewidth instead of size for line width.
  • Compatibility fix with dplyr 1.1.0
  • Small fixes and improvements

xpose 0.4.14

CRAN release: 2022-11-07

  • Compatibility fix with ggplot2 3.4.0
  • Compatibility fix with stringr 1.5.0 (@hadley, #207)
  • xpose will now give a warning on windows if options(readr.read_lazy = TRUE) (@AndreasCalvagone #198)
  • Fixed errors in plots when calling function with xpose:: (@mattfidler #95)
  • Updated continuous integration workflow
  • Small fixes and improvements

xpose 0.4.13

CRAN release: 2021-06-30

  • Compatibility fix with ggplot2 3.3.4
  • Compatibility fix with readr 2.0.0 (@jimhester, #194)

xpose 0.4.12

CRAN release: 2021-01-12

  • Compatibility fix for R 4.1.x

xpose 0.4.11

CRAN release: 2020-07-22

  • Improve noLD in tests

xpose 0.4.10

CRAN release: 2020-06-08

  • Compatibility fix for vpc 1.2.1

xpose 0.4.9

CRAN release: 2020-05-25

  • Compatibility fix for dplyr 1.0.0 and vpc 1.2.0

xpose 0.4.8

CRAN release: 2020-03-17

  • Compatibility fix for ggplot 3.3.0 and tibble 3.0.0

xpose 0.4.7

CRAN release: 2020-02-04

  • Fixed error in documentation check fail in R 4.0.0

xpose 0.4.6

CRAN release: 2020-01-12

  • Updated tests for compatibility with R 4.0.0
  • Shortened title of dv_preds_vs_idv

xpose 0.4.5

CRAN release: 2019-10-07

General

  • The gg_theme argument in xpose_data, update_themes or plots now accepts a function returning a complete ggplot2 theme. In addition theme gg_theme can now accept theme elements in update_themes and plots. (#157)
  • Added compatibility with tidyr 1.0.0 (#166)
  • Small fixes to vignettes, documentations and website

xpose 0.4.4

CRAN release: 2019-03-21

General

xpose 0.4.3

CRAN release: 2018-07-28

General

  • Fixed bug in get_prm()/prm_table() where off diagonal correlations were improperly computed.
  • Fixed bug in print.xpose_data()where a warning from stringi was returned.
  • Fixed multiple bugs introduced by the new versions of tidyverse packages
  • Added compatibility to ggplot2 v3.0.0

xpose 0.4.2

CRAN release: 2018-01-30

General

  • Address CRAN requests
  • Improved internal structure of VPC
  • Fixed bug with vpc 1.0.1

xpose 0.4.1

CRAN release: 2018-01-09

General

  • Improved integration of the xpose.nlmixr package
  • Prevented a problem in the print() function with the upcoming ggplot2 version
  • Fixed bug in summary() where missing estimation method was reported if NM code written as METH=… instead of METHOD=…
  • Fixed bug where labels in prm_table(), get_prm() were missing with a commented row in $THETA, $OMEGA or $SIGMA
  • Fixed bug in prm_table(), get_prm() where only NA would be reported when missing the -1000000006 record in the .ext file (i.e. NM <7.3)
  • Prevented negative RSE in prm_table() and get_prm()
  • Improved description of the prm_table() output
  • Fixed bug in summary() with non numeric covariance step time
  • Fixed bug in ind_plots() where the aesthetics would get mixed up if the variable names were changed
  • Small fixes to vignettes, documentations and website

xpose 0.4.0

CRAN release: 2017-11-17

General

Data import/edit

  • Added compatibility with dplyr::n() when editing xpdb #51
  • Added get_special() to access special data
  • Improved get_prm() labeller parsing with OMEGA and SIGMA BLOCKS
  • get_prm() and prm_table():
    • Both gained a transform argument to disable parameter transformation
    • RSE is now always reported (also for untransformed)
    • Corrected RSE for off-diagonal elements from OMEGA and SIGMA when output as correlation and SE when output as standard deviation
  • Added list_data(), list_files() and list_special() to get info on the data structure in the xpdb
  • Renamed the arguments problem, subprob, method and source to .problem, .subprob, etc. for consistency with dplyr functions.
  • Improved error checking for themes in xpose_data
  • Improved error checking in get_prm()

Plots

  • print.xpose_plot() now displays a message when the number of facets is > 20, informing that many panels are being printed and that it may take a while to render the plot
  • Improved .problem, .subprob and .method error checking

xpose 0.3.0

General

  • Improved documentation and testing
  • Improved compatibility with NONMEM 7.4.1
  • Improved website look, and content with new ‘FAQ’ and ‘Plot’ sections and a cheat-sheet
  • Multiple bug small bug fixes and code improvements
  • Added multiple page functionality to all plots and xpose_save()
  • Added get_prm() function

Data import/edit

Plots

  • Small modifications to xp_theme() defaults
  • Faceting options can now be defined globally in the xp_theme
  • Added amt_vs_idv() plot
  • Improved faceting of minimization plots
  • Multiples improvements to the vpc_data() and vpc() functions.
  • More keywords added to template_titles

xpose 0.2.0

General

  • Renamed package xpose
  • Added example dataset xpdb_ex_pk
  • New internal data structure using nested tibbles
  • Improvement of documentation, and testing

Data import

read_nm_tables()
  • Handles NONMEM tables in .csv, .zip format
  • Handles multiple $PROB and tables with FIRSTONLY option
  • Added option to import data manually as in xpose4 with manual_nm_import()
  • Added indexing of variable and convenience functions to edit it: set_vars_type(), set_vars_label(), set_vars_units()
read_nm_files()
  • Now imports multiple $PROB and sub-problems

Summary

  • Added print() and summary() methods for xpdb
  • Added list_vars() function to list available variables
  • Added many new keywords to template_titles

Access xpdb

Plots

VPC

ggxpose 0.1.0

First commit

  • Proof of concept pre-release around simple goodness-of-fit functions like dv_vs_ipred()

Definition of core functions and workflow

  • Defined the xpose_geom() core function to specifically direct arguments to ggplot2 layers
  • Defined the concept of template titles
  • Define the templates for xpose_theme()
  • Makes use of the tidyverse and pipes %>%