Package index • DHARMa

All functions

DHARMa DHARMa-package: DHARMa: Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models
benchmarkRuntime(): Benchmark runtimes of several functions
createDHARMa(): Create a DHARMa object from hand-coded simulations or Bayesian posterior predictive simulations.
createData(): Simulate test data
getData(): Get model data
getFamily(): Get model family
getFitted(): Get fitted/predicted values
getFixedEffects(): Extract fixed effects of a supported model
getObservedResponse(): Get model response
getPearsonResiduals(): Get Pearson residuals
getPredictorNames(): Get predictor names
getQuantile(): Calculate Residual Quantiles
getRandomState(): Record and restore a random state
getRefit(): Get model refit
getResiduals(): Get model residuals
getSimulations(): Get model simulations
hist(<DHARMa>): Histogram of DHARMa residuals
hurricanes: Hurricanes
outliers(): Return outliers
plot(<DHARMa>): DHARMa standard residual plots
plot(<DHARMaBenchmark>): Plots DHARMa benchmarks
plotConventionalResiduals(): Conventional residual plot
plotQQunif(): Quantile-quantile plot for a uniform distribution
plotResiduals(): Generic res ~ pred scatter plot with spline or quantile regression on top
plotResidualsAll(): Create multiple residual plots simultaneously.
plotSimulatedResiduals(): DHARMa standard residual plots (deprecated)
print(<DHARMa>): Print simulated residuals
recalculateResiduals(): Recalculate residuals with grouping
residuals(<DHARMa>): Return residuals of a DHARMa simulation
runBenchmarks(): Benchmark calculations
simulateLRT(): Simulated likelihood ratio tests for (generalized) linear mixed models
simulateResiduals(): Create simulated residuals
testCategorical(): Test for categorical dependencies
testDispersion(): DHARMa dispersion tests
testGeneric(): Test for a generic summary statistic based on simulated data
testOutliers(): Test for outliers
testOverdispersion(): Simulated overdisperstion tests (deprecated)
testOverdispersionParametric(): Parametric overdisperstion tests (deprecated)
testPDistribution(): Plot distribution of p-values.
testPhylogeneticAutocorrelation(): Test for phylogenetic autocorrelation
testQuantiles(): Test for quantiles
testResiduals(): DHARMa general residual test
testSimulatedResiduals(): Residual tests
testSpatialAutocorrelation(): Test for distance-based spatial (or similar type) autocorrelation
testTemporalAutocorrelation(): Test for temporal autocorrelation
testUniformity(): Test for overall uniformity
testZeroInflation(): Tests for zero-inflation
transformQuantiles(): Transform quantiles to pdf (deprecated)